Skip to content. | Skip to navigation

Personal tools

 

 

 

 

 

You are here: Home / CETAF Members / Collection Dashboard Data model / Collections digitisation

Collections digitisation

ST = string, T= text, RT= Rich text, C= Choice, MC= Multiple choice
Field Type Option Indexed Remarks

Title (title)

ST

 

 

 

Description (description)

T

 

 

 

Proportion digitized (proportion)

C

  • 0-10

  • 11-20

  • 21-30

  • 31-40

  • 41-50

  • 51-60

  • 61-70

  • 71-80

  • 81-90

  • 91-100

 

 

Digitisation Strategy (digitisation strategy)

T

 

 

 

Institution Database iframe (institution_database_iframe)

RT

 

 

If available: iframe of the institutional collection database statistics

List of digitized specimens (list_of_digitized_specimens)

 

RT

 

 

If no Iframe. Put here the table of the digitised specimens.

Imaging

Target (target)

MC

  • overview

  • label

  • detailed

  • tray

 

 

Technique (technique)

MC

  • 2D : scan

  • 2D : picture

  • 2D : picture macroscopy

  • 2D : picture microscopy

  • 2D : picture SEM

  • 2D+ : photostacking

  • 2d+ : multispectral

  • 3D : surface

  • 3D : surface : photogrammetry

  • 3D : surface : scan

  • 3D : surface : scan : laser

  • 3D : surface : scan : laser microscopy

  • 3D : surface : scan : structure ligth

  • 3D : surface : scan : structure ligth microscopy

  • 3D : internal

  • 3D : internal : computed tomography

  • 3D : internal : microcomputed tomography

  • 3D+ : multispectral photogrammetry

 

 

Calibration (calibration)

MC

  • internal scale

  • scaled

  • internal color chart

  • calibrated

 

 

Setup description (setup_description)

RT

 

 

 

Information

What (what)

MC

  • Drawer

  • Jar

  • Box

  • Transparent cover

  • Hard cover

  • MinigripUI: Unique identifier

  • PID: Persistent identifier (Stable URI, DOI, etc)

  • Record: creation date&time

  • Record: creator

  • Material type: BioGeo 1.

  • Material type: Storage 2.

  • Material type: GeoPaleo 3. (if applicable)

  • Deposited: Institute name

  • Deposited: Institute UI (if applicable)

  • Taxon: name(s)

  • Taxon: taxon name UI (CoL+)

  • Type status

 

 

Who (who)

MC

  • Collector: name

  • Collector: UI

  • Collector: number (if present on specimen)

 

 

When (when)

C

  • Collection: date (if present on specimen)

 

 

Where (where)

MC

  • Geography: region 4. (if present on specimen)

  • Geography: named locality (if present on specimen)

  • Geography: Latlong in decimal degrees (if present on specimen)

  • Geography: altitude/depth (if present on specimen)

 

 

Varia

MC

  • All other data present on specimen including annotations & provenance?

  • Linked material

 

 
<model xmlns:form="//namespaces.plone.org/supermodel/form" xmlns:i18n="//xml.zope.org/namespaces/i18n" xmlns:indexer="//namespaces.plone.org/supermodel/indexer" xmlns:marshal="//namespaces.plone.org/supermodel/marshal" xmlns:security="//namespaces.plone.org/supermodel/security" xmlns="//namespaces.plone.org/supermodel/schema">
  <schema>
    <field name="proportion" type="zope.schema.Choice" indexer:searchable="true">
      <description/>
      <required>False</required>
      <title>Proportion digitized</title>
      <values>
        <element>0-10</element>
        <element>11-20</element>
        <element>21-30</element>
        <element>31-40</element>
        <element>41-50</element>
        <element>51-60</element>
        <element>61-70</element>
        <element>71-80</element>
        <element>81-90</element>
        <element>91-100</element>
      </values>
    </field>
    <field name="digitization_strategy" type="zope.schema.Text" indexer:searchable="true">
      <description/>
      <required>False</required>
      <title>Digitization Priorities</title>
    </field>
    <field name="institution_database_iframe" type="plone.app.textfield.RichText">
      <description/>
      <required>False</required>
      <title>Institution database Iframe</title>
    </field>
    <field name="list_of_digitized_specimens" type="plone.app.textfield.RichText" indexer:searchable="true">
      <description/>
      <required>False</required>
      <title>List of digitized specimens</title>
    </field>
    <fieldset name="mids" label="MIDS" description="Minimal Information for Digital Specimens (ICEDIG - MS35)">
      <field name="mids_level" type="zope.schema.Set">
        <default/>
        <description>Digitisation&#8217; classification, indicating the subgroup of the collection description classification.</description>
        <required>False</required>
        <title>MIDS level</title>
        <value_type type="zope.schema.Choice">
          <values>
            <element>Not digitised</element>
            <element>Minimaly digitized (MIDS-0)</element>
            <element>Regularly digitized (MIDS-1)</element>
            <element>Fully digitised (MIDS-2)</element>
            <element>Additionally or exensively digitised (MIDS-3)</element>
          </values>
        </value_type>
      </field>
      <field name="mids_0_help" type="plone.app.textfield.RichText">
        <default>&lt;p&gt;&lt;strong&gt;Based on ICEDIG Deliverable D2.3 (31 March 2019)&lt;/strong&gt;&lt;/p&gt;&#13;
&#13;
&lt;table border="0" cellpadding="1" cellspacing="1" style="width:800px"&gt;&#13;
    &lt;tbody&gt;&#13;
        &lt;tr&gt;&#13;
            &lt;td&gt;&#13;
            &lt;hr /&gt;&#13;
            &lt;p&gt;&lt;strong&gt;MIDS-0&lt;/strong&gt;&lt;/p&gt;&#13;
&#13;
            &lt;p&gt;The Digital Specimen Object (DSO; a digital representation of the physical specimen in a collection) only contains metadata and one or more media files. This level also includes the following three Darwin Core (DwC) elements that are related to the process of digitisation and collection management rather than the specimen.&lt;/p&gt;&#13;
&#13;
            &lt;ol&gt;&#13;
                &lt;li&gt;&lt;a href="//terms.tdwg.org/wiki/dwc:institutionCode" target="_blank"&gt;DwC:institutionCode&lt;/a&gt; &#8211; from e.g., Index Herbariorum and other catalogues.&lt;/li&gt;&#13;
                &lt;li&gt;&lt;a href="//terms.tdwg.org/wiki/dwc:collectionCode" target="_blank"&gt;DwC:collectionCode&lt;/a&gt; &#8211; if exists, given by the institution.&lt;/li&gt;&#13;
                &lt;li&gt;&lt;a href="//terms.tdwg.org/wiki/dwc:catalogNumber"&gt;DwC:catalogNumber &lt;/a&gt;&#8211; automatically readable from the specimen label; must be attached to the specimen prior to imaging.&lt;/li&gt;&#13;
            &lt;/ol&gt;&#13;
            &lt;/td&gt;&#13;
        &lt;/tr&gt;&#13;
    &lt;/tbody&gt;&#13;
&lt;/table&gt;&#13;
&#13;
&lt;p&gt;&amp;nbsp;&lt;/p&gt;&#13;
&#13;
&lt;table border="0" cellpadding="1" cellspacing="1" style="width:800px"&gt;&#13;
    &lt;tbody&gt;&#13;
        &lt;tr&gt;&#13;
            &lt;td&gt;&#13;
            &lt;hr /&gt;&#13;
            &lt;p&gt;&lt;strong&gt;MIDS-1&lt;/strong&gt;&lt;/p&gt;&#13;
&#13;
            &lt;p&gt;Includes MIDS-0, but adds basic data elements that can be entered in bulk for a number of DSOs. Most scientific collections include this bulk information in their boxes and folders (plants), or drawers and units (insects). These elements typically are:&lt;/p&gt;&#13;
&#13;
            &lt;ol&gt;&#13;
                &lt;li&gt;&lt;a href="//terms.tdwg.org/wiki/dwc:scientificName" target="_blank"&gt;DwC:scientificName&lt;/a&gt; &#8211; at some taxonomic level&lt;/li&gt;&#13;
                &lt;li&gt;&lt;a href="//terms.tdwg.org/wiki/dwc:higherGeography"&gt;DwC:higherGeography&lt;/a&gt; &#8211; at some accuracy such as &#8216;Europe&#8217;&lt;/li&gt;&#13;
            &lt;/ol&gt;&#13;
            &lt;/td&gt;&#13;
        &lt;/tr&gt;&#13;
    &lt;/tbody&gt;&#13;
&lt;/table&gt;&#13;
&#13;
&lt;table border="0" cellpadding="1" cellspacing="1" style="width:800px"&gt;&#13;
    &lt;tbody&gt;&#13;
        &lt;tr&gt;&#13;
            &lt;td&gt;&#13;
            &lt;hr /&gt;&#13;
            &lt;p&gt;&lt;strong&gt;MIDS-2&lt;/strong&gt;&lt;/p&gt;&#13;
&#13;
            &lt;p&gt;Includes MIDS-1, but adds data elements that have been transcribed from the specimen label, literally. These include:&lt;/p&gt;&#13;
&#13;
            &lt;ul&gt;&#13;
                &lt;li&gt;location&lt;/li&gt;&#13;
                &lt;li&gt;date&lt;/li&gt;&#13;
                &lt;li&gt;collector name&lt;/li&gt;&#13;
                &lt;li&gt;scientific name&lt;br /&gt;&#13;
                &amp;nbsp;&lt;/li&gt;&#13;
            &lt;/ul&gt;&#13;
&#13;
            &lt;p&gt;Many different DwC elements, often using the verbatim variety of the elements, can be used to describe these data elements, which can vary between collection types.&lt;/p&gt;&#13;
            &lt;/td&gt;&#13;
        &lt;/tr&gt;&#13;
    &lt;/tbody&gt;&#13;
&lt;/table&gt;&#13;
&#13;
&lt;table border="0" cellpadding="1" cellspacing="1" style="width:800px"&gt;&#13;
    &lt;tbody&gt;&#13;
        &lt;tr&gt;&#13;
            &lt;td&gt;&#13;
            &lt;hr /&gt;&#13;
            &lt;p&gt;&lt;strong&gt;MIDS-3&lt;/strong&gt;&lt;/p&gt;&#13;
&#13;
            &lt;p&gt;Includes MIDS-2, but adds interpretations. An example of this is:&lt;/p&gt;&#13;
&#13;
            &lt;ul&gt;&#13;
                &lt;li&gt;finding the geographic coordinates of the collecting locality through research on gazetteers or field notebooks.&lt;/li&gt;&#13;
                &lt;li&gt;asserting a taxonomic concept to the specimen (&lt;a href="//terms.tdwg.org/wiki/dwc:taxonID"&gt;DwC:taxonID&lt;/a&gt;) and the currently valid scientific name&lt;br /&gt;&#13;
                (MIDS-1 and MIDS-2 level scientific names are not necessarily the valid ones).&lt;/li&gt;&#13;
            &lt;/ul&gt;&#13;
            &lt;/td&gt;&#13;
        &lt;/tr&gt;&#13;
    &lt;/tbody&gt;&#13;
&lt;/table&gt;&#13;
</default>
        <description/>
        <required>False</required>
        <title>MIDS help</title>
      </field>
    </fieldset>
    <fieldset name="imaging" label="Imaging">
      <field name="target" type="zope.schema.Set" indexer:searchable="true">
        <default/>
        <description/>
        <required>False</required>
        <title>Target</title>
        <value_type type="zope.schema.Choice">
          <values>
            <element>overview</element>
            <element>label</element>
            <element>detailed</element>
            <element>tray</element>
          </values>
        </value_type>
      </field>
      <field name="technique" type="zope.schema.Set" indexer:searchable="true">
        <default/>
        <description/>
        <required>False</required>
        <title>Technique</title>
        <value_type type="zope.schema.Choice">
          <values>
            <element>2D : scan</element>
            <element>2D : picture</element>
            <element>2D : picture macroscopy</element>
            <element>2D : picture microscopy</element>
            <element>2D : picture SEM</element>
            <element>2D+ : photostacking</element>
            <element>2d+ : multispectral</element>
            <element>3D : surface</element>
            <element>3D : surface : photogrammetry</element>
            <element>3D : surface : scan</element>
            <element>3D : surface : scan : laser</element>
            <element>3D : surface : scan : laser microscopy</element>
            <element>3D : surface : scan : structure ligth</element>
            <element>3D : surface : scan : structure ligth microscopy</element>
            <element>3D : internal</element>
            <element>3D : internal : computed tomography</element>
            <element>3D : internal : microcomputed tomography</element>
            <element>3D+ : multispectral photogrammetry</element>
          </values>
        </value_type>
      </field>
      <field name="calibration" type="zope.schema.Set" indexer:searchable="true">
        <default/>
        <description/>
        <required>False</required>
        <title>Calibration</title>
        <value_type type="zope.schema.Choice">
          <values>
            <element>internal scale</element>
            <element>scaled</element>
            <element>internal color chart</element>
            <element>calibrated</element>
            <element></element>
          </values>
        </value_type>
      </field>
      <field name="setup_description" type="plone.app.textfield.RichText" indexer:searchable="true">
        <description/>
        <required>False</required>
        <title>Setup description</title>
      </field>
    </fieldset>
    <fieldset name="information" label="Information">
      <field name="what" type="zope.schema.Set" indexer:searchable="true">
        <default/>
        <description/>
        <required>False</required>
        <title>What</title>
        <value_type type="zope.schema.Choice">
          <values>
            <element>UI: Unique identifier</element>
            <element>PID: Persistent identifier (Stable URI, DOI, etc)</element>
            <element>Record: creation date&amp;time</element>
            <element>Record: creator</element>
            <element>Material type: BioGeo</element>
            <element>Material type: Storage</element>
            <element>Material type: GeoPaleo (if applicable)</element>
            <element>Deposited: Institute name</element>
            <element>Deposited: Institute UI (if applicable)</element>
            <element>Taxon: name(s)</element>
            <element>Taxon: taxon name UI (CoL+)</element>
            <element>Type status</element>
            <element></element>
          </values>
        </value_type>
      </field>
      <field name="who" type="zope.schema.Set" indexer:searchable="true">
        <default/>
        <description/>
        <required>False</required>
        <title>Who</title>
        <value_type type="zope.schema.Choice">
          <values>
            <element>Collector: name</element>
            <element>Collector: UI</element>
            <element>Collector: number (if present on specimen)</element>
          </values>
        </value_type>
      </field>
      <field name="when" type="zope.schema.Set" indexer:searchable="true">
        <default>
          <element>Collection: date (if present on specimen)</element>
        </default>
        <description/>
        <required>False</required>
        <title>When</title>
        <value_type type="zope.schema.Choice">
          <values>
            <element>Collection: date (if present on specimen)</element>
          </values>
        </value_type>
      </field>
      <field name="where" type="zope.schema.Set" indexer:searchable="true">
        <default/>
        <description/>
        <required>False</required>
        <title>Where</title>
        <value_type type="zope.schema.Choice">
          <values>
            <element>Geography: region (if present on specimen)</element>
            <element>Geography: named locality (if present on specimen)</element>
            <element>Geography: Latlong in decimal degrees (if present on specimen)</element>
            <element>Geography: altitude/depth (if present on specimen)</element>
            <element></element>
          </values>
        </value_type>
      </field>
      <field name="varia" type="zope.schema.Set" indexer:searchable="true">
        <default/>
        <description/>
        <required>False</required>
        <title>Varia</title>
        <value_type type="zope.schema.Choice">
          <values>
            <element>All other data present on specimen including annotations &amp; provenance?</element>
            <element>Linked material</element>
          </values>
        </value_type>
      </field>
    </fieldset>
  </schema>
</model>

 

Info menu
NH Sub-collection
More defined assemblage inside of the main collection
 
Collection geography
Geographical coverage (country, habitat)
 
Collection stratigraphy
Stratigraphycal coverage
 
Collection storage
Storage data (preparation, conservation)
 
Collection digitization
Digitisation metadata (scope, techniques, data)
 
Collection valorisation
Valorisation (publications, websites,...)
 
Collection staff
Staff involved in the management/conservation of the collection
 
People
People descriptor
 

 

  Countries
 
   
  Institutions
   
  Collections