The Museum für Naturkunde is an independent trust under public law governed by:
- a Board of Trustees (Stiftungsrat);
- an appointed Director General;
- a Scientific Advisory Board ;
- The Board of Trustees supervises the scientific, programmatic, and economic affairs of the museum.
It has three born members, one each representing the Senate of Berlin and the Federal Government, as the main funding organizations, and the president of Humboldt-Universität zu Berlin. In addition, it comprises up to eight public figures elected by the Senate of Berlin and the Federal Government for a period of four years. The representative from the Senate of Berlin is the chair. The Scientific Advisory Board advises the Director General and the Board of Trustees on scientific and programmatic questions. It comprises up to seven members. They are internationally recognised scientists from Germany or abroad, whose scientific expertise matches the scientific disciplines of the museum. Ideally, they also have work experience in museums. The Director General is the Head of the Museum. He is supported by a Managing Director.
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